How to cite the R package adephylo

adephylo is a popular R package that is available at https://cran.r-project.org/web/packages/adephylo/index.html. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the adephylo package have suggested.

Example of an in-text citation

Analysis of the data was done using the adephylo package (v1.1-11; Jombart et al., 2010).

Reference list entry

Jombart, T., Balloux, F., & Dray, S. (2010). Adephylo: New tools for investigating the phylogenetic signal in biological traits. Bioinformatics, 26(15), 1907–1909.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the adephylo package v1.1-11 (1).

Reference list entry

1.
Jombart T, Balloux F, Dray S. Adephylo: New tools for investigating the phylogenetic signal in biological traits. Bioinformatics. 2010 Aug 1;26(15):1907–9.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Jombart2010-jf,
  title     = "Adephylo: New tools for investigating the phylogenetic signal in
               biological traits",
  author    = "Jombart, Thibaut and Balloux, Fran{\c c}ois and Dray,
               St{\'e}phane",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  26,
  number    =  15,
  pages     = "1907--1909",
  month     =  aug,
  year      =  2010,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btq292",
  language  = "en",
  issn      = "1460-2059, 1367-4803",
  doi       = "10.1093/bioinformatics/btq292"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Jombart, Thibaut
AU  - Balloux, François
AU  - Dray, Stéphane
TI  - Adephylo: New tools for investigating the phylogenetic signal in
      biological traits
T2  - Bioinformatics
VL  - 26
IS  - 15
SP  - 1907-1909
PY  - 2010
DA  - 2010/8/1
PB  - Oxford University Press (OUP)
SN  - 1460-2059
DO  - 10.1093/bioinformatics/btq292
UR  - http://dx.doi.org/10.1093/bioinformatics/btq292
ER  -

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adephylo R package release history

Version	Release date
1.1-10	2016-12-13
1.1-6	2013-11-30
1.1-5	2013-08-10
1.1-4	2013-05-22
1.1-3	2012-10-31
1.1-2	2011-11-07
1.1-1	2011-01-17
1.1-0	2010-04-05
1.0-2	2010-01-12
1.0-1	2009-11-05