How to cite the Bioconductor package tigre

tigre is a popular Bioconductor package that is available at https://bioconductor.org/packages/tigre. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the tigre package have suggested.

Example of an in-text citation

Analysis of the data was done using the tigre package (v1.44.0; Honkela et al., 2011).

Reference list entry

Honkela, A., Gao, P., Ropponen, J., Rattray, M., & Lawrence, N. D. (2011). tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor. Bioinformatics, 27(7), 1026–1027.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the tigre package v1.44.0 (1).

Reference list entry

1.
Honkela A, Gao P, Ropponen J, Rattray M, Lawrence ND. tigre: Transcription factor inference through gaussian process reconstruction of expression for bioconductor. Bioinformatics. 2011 Apr 1;27(7):1026–7.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Honkela2011-ai,
  title     = "tigre: Transcription factor inference through gaussian process
               reconstruction of expression for bioconductor",
  author    = "Honkela, A and Gao, P and Ropponen, J and Rattray, M and
               Lawrence, N D",
  journal   = "Bioinformatics",
  publisher = "Oxford University Press (OUP)",
  volume    =  27,
  number    =  7,
  pages     = "1026--1027",
  month     =  apr,
  year      =  2011,
  url       = "http://dx.doi.org/10.1093/bioinformatics/btr057",
  language  = "en",
  issn      = "1367-4803, 1460-2059",
  doi       = "10.1093/bioinformatics/btr057"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Honkela, A
AU  - Gao, P
AU  - Ropponen, J
AU  - Rattray, M
AU  - Lawrence, N D
TI  - tigre: Transcription factor inference through gaussian process
      reconstruction of expression for bioconductor
T2  - Bioinformatics
VL  - 27
IS  - 7
SP  - 1026-1027
PY  - 2011
DA  - 2011/4/1
PB  - Oxford University Press (OUP)
SN  - 1367-4803
DO  - 10.1093/bioinformatics/btr057
UR  - http://dx.doi.org/10.1093/bioinformatics/btr057
ER  -

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