How to cite the Bioconductor package progeny

progeny is a popular Bioconductor package that is available at https://bioconductor.org/packages/progeny. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the progeny package have suggested.

Example of an in-text citation

Analysis of the data was done using the progeny package (v1.12.0; Schubert et al., 2018).

Reference list entry

Schubert, M., Klinger, B., Klünemann, M., Sieber, A., Uhlitz, F., Sauer, S., Garnett, M. J., Blüthgen, N., & Saez-Rodriguez, J. (2018). Perturbation-response genes reveal signaling footprints in cancer gene expression. In Nature communications (Vol. 9, Issue 20).

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the progeny package v1.12.0 (1).

Reference list entry

1.
Schubert M, Klinger B, Klünemann M, Sieber A, Uhlitz F, Sauer S, et al. Perturbation-response genes reveal signaling footprints in cancer gene expression. Vol. 9, Nature communications. 2018.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@MISC{Schubert2018-in,
  title   = "Perturbation-response genes reveal signaling footprints in cancer
             gene expression",
  author  = "Schubert, Michael and Klinger, Bertram and Kl{\"u}nemann, Martina
             and Sieber, Anja and Uhlitz, Florian and Sauer, Sascha and
             Garnett, Mathew J and Bl{\"u}thgen, Nils and Saez-Rodriguez, Julio",
  journal = "Nature communications",
  volume  =  9,
  number  =  20,
  year    =  2018
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - MISC
AU  - Schubert, Michael
AU  - Klinger, Bertram
AU  - Klünemann, Martina
AU  - Sieber, Anja
AU  - Uhlitz, Florian
AU  - Sauer, Sascha
AU  - Garnett, Mathew J
AU  - Blüthgen, Nils
AU  - Saez-Rodriguez, Julio
TI  - Perturbation-response genes reveal signaling footprints in cancer gene
      expression
T2  - Nature communications
VL  - 9
IS  - 20
PY  - 2018
DA  - 2018
ER  -

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