How to cite the Bioconductor package bsseq

bsseq is a popular Bioconductor package that is available at https://bioconductor.org/packages/bsseq. By citing R packages in your paper you lay the grounds for others to be able to reproduce your analysis and secondly you are acknowledging the time and work people have spent creating the package.

APA citation

Formatted according to the APA Publication Manual 7^th edition. Simply copy it to the References page as is.

APA

The minimal requirement is to cite the R package in text along with the version number. Additionally, you can include the reference list entry the authors of the bsseq package have suggested.

Example of an in-text citation

Analysis of the data was done using the bsseq package (v1.26.0; Hansen et al., 2012).

Reference list entry

Hansen, K. D., Langmead, B., & Irizarry, R. A. (2012). BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions. Genome Biology, 13(10), R83.

Vancouver citation

Formatted according to Vancouver style. Simply copy it to the references section as is.

Vancouver

Example of an in-text citation

Analysis of the data was done using the bsseq package v1.26.0 (1).

Reference list entry

1.
Hansen KD, Langmead B, Irizarry RA. BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions. Genome Biol. 2012;13(10):R83.

BibTeX

Reference entry in BibTeX format. Simply copy it to your favorite citation manager.

BibTeX

@ARTICLE{Hansen2012-qm,
  title     = "{BSmooth}: from whole genome bisulfite sequencing reads to
               differentially methylated regions",
  author    = "Hansen, Kasper D and Langmead, Benjamin and Irizarry, Rafael A",
  journal   = "Genome Biol",
  publisher = "Springer Science and Business Media LLC",
  volume    =  13,
  number    =  10,
  pages     = "R83",
  year      =  2012,
  url       = "http://dx.doi.org/10.1186/gb-2012-13-10-r83",
  language  = "en",
  issn      = "1465-6906",
  doi       = "10.1186/gb-2012-13-10-r83"
}

RIS

Reference entry in RIS format. Simply copy it to your favorite citation manager.

RIS

TY  - JOUR
AU  - Hansen, Kasper D
AU  - Langmead, Benjamin
AU  - Irizarry, Rafael A
TI  - BSmooth: from whole genome bisulfite sequencing reads to differentially
      methylated regions
T2  - Genome Biol
VL  - 13
IS  - 10
SP  - R83
PY  - 2012
DA  - 2012
PB  - Springer Science and Business Media LLC
SN  - 1465-6906
DO  - 10.1186/gb-2012-13-10-r83
UR  - http://dx.doi.org/10.1186/gb-2012-13-10-r83
ER  -

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